Babak Khorsand, Mohsen Rajabnia, Ali Jahanian, Mobin Fathy, Somayye Taghvaei, Hamidreza Houri, Enhancing the accuracy and effectiveness of diagnosis of spontaneous bacterial peritonitis in cirrhotic patients: a machine learning approach utilizing clinical and laboratory data, Advances in Medical Sciences , Volume 70, 1-7, 2025
Hamdam Hourfar, Pegah Taklifi, Mahsa Razavi, Babak Khorsand*, Machine Learning-Driven Identification of Molecular Subgroups in Medulloblastoma via Gene Expression Profiling, Clinical Oncology 1-12, 2025
Sara Zareei, Babak Khorsand*, Alireza Dantism, Neda Zareei, PeptiHub: a curated repository of precisely annotated cancer-related peptides with advanced utilities for peptide exploration and discovery, The Journal of Biological Databases and Curation (2024) baae092, 2024
Tahereh Haghzad, Babak Khorsand, S Adeleh Razavi, Mehdi Hedayati, A computational approach to assessing the prognostic implications of BRAF and RAS mutations in patients with papillary thyroid carcinoma, Endorcine (2024) 1-16, 2024
L Irankhah, B Khorsand, M Naghibzadeh, A Savadi, Analyzing the performance of short read classification tools on metagenomic samples toward proper diagnosis of diseases, Journal of Bioinformatics and Computational Biology, 2024
SA Razavi, B Khorsand, P Salehipour, M Hedayati, Metabolite signature of human malignant thyroid tissue: A systematic review and meta‐analysis, Cancer Medicine 13 (8), e7184, 2024
AA Kharaghani, N Harzandi, B Khorsand, M Rajabnia, AA Kharaghani, H Houri, High prevalence of Mucosa-Associated extended-spectrum β-Lactamase-producing Escherichia coli and Klebsiella pneumoniae among Iranain patients with inflammatory bowel disease (IBD), Annals of Clinical Microbiology and Antimicrobials 22 (1), 86, 2023
M Sahlolbei, M Azangou, J Khanali, B Khorsand, A Shiralipour, N Ahmadbeigi, Z Madjd, H Ghanbarian, A Ardjmand, S Hashemi, J Kiani, Engineering chimeric autoantibody receptor T cells for targeted B cell depletion in multiple sclerosis model: An in-vitro study, Heliyon 9 (9), 2023
MR Samandari, B Khorsand*, S Zareei, M Amanlou, H Rostamabadi, Various concentrations of hesperetin induce different types of programmed cell death in human breast cancerous and normal cell lines in a ROS-dependent manner, Chemico-Biological Interactions 382, 110642, 2023
M Rostami, N Asri, M Olfatifar, B Khorsand, H Houri, K Rostami, Systematic review and dose-response meta-analysis on the relationship between different gluten doses and risk of coeliac disease relapse, Nutrients 15 (6), 1390, 2023
A Shiralipour, B Khorsand, L Jafari, M Salehi, M Kazemi, J Zahiri, V Jajarmi, B Kazemi, Identifying key lysosome-related genes associated with drug-resistant breast cancer using computational and systems biology approach, Iranian Journal of Pharmaceutical Research: IJPR 21 (1), 2022
MR Samandari, B Khorsand*, K Esmaeilzadeh, S Sarhadi, N Hatami, B Khaleghdoust, E Loit, The use of integrated text mining and protein-protein interaction approach to evaluate the effects of combined chemotherapeutic and chemopreventive agents in cancer therapy, PLoS One 17 (11), e0276458, 2022
H Houri, H Asadzadeh, S Firuzabadi, B Khorsand, F Soltanpoor, M Rafieepoor, M Tanhaei, G Soleymani, M Azimirad, A Sadeghi, N Ebrahimi , F Zamani, R Talaei, A Yadegar, SR Mohebi, G Sherkat, M Azalli, H Malekpour, G Hemmasi, MR Zali, High prevalence rate of microbial contamination in patient-ready gastrointestinal endoscopes in Tehran, Iran: An alarming sign for the occurrence of severe outbreaks, Microbiology Spectrum 10 (5), e01897-22, 2022
B Khorsand, H Asadzadeh Aghdaei, E Nazemalhosseini, B Nadalian, H Houri, Overrepresentation of Enterobacteriaceae and Escherichia coli is the major gut microbiome signature in Crohn’s disease and ulcerative colitis; a comprehensive metagenomic analysis of IBDMDB datasets, Frontiers in Cellular and Infection Microbiology 12, 1015890, 2022
M Soltanyzadeh, B Khorsand*, AA Baneh, H Houri, Clarifying differences in gene expression profile of umbilical cord vein and bone marrow-derived mesenchymal stem cells; a comparative in silico study, Informatics in Medicine Unlocked 33, 101072, 2022
L Sadeghi, AA Rizvanov, B Dabirmanesh, II Salafutdinov, J Zahiri, B Khorsand, K Khajeh, Y Fathollahi, Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network, Scientific reports 11 (1), 8252, 2021
B Khorsand*, A Savadi, M Naghibzadeh, Comprehensive host-pathogen protein-protein interaction network analysis, BMC bioinformatics 21, 1-22, 2020
B Khorsand*, A Savadi, M Naghibzadeh, SARS-CoV-2-human protein-protein interaction network, Informatics in medicine unlocked 20, 100413, 2020
B Khorsand, A Savadi, M Naghibzadeh, Parallelizing Assignment Problem with DNA Strands, Iranian Journal of Biotechnology 18 (1), e2547, 2020
B Khorsand, A Savadi, J Zahiri, M Naghibzadeh, Alpha influenza virus infiltration prediction using virus-human protein-protein interaction network, Mathematical Biosciences and Engineering 17 (4), 3109-3129, 2020
J Zahiri, B Khorsand, AA Yousefi, M Kargar, R Shirali Hossein Zade, AntAngioCOOL: computational detection of anti-angiogenic peptides, Journal of translational medicine 17, 1-6, 2019
S Samadzadeh, R Abolfazli, B Khorsand, J Zahiri, SS Arab, Machine learning-aided discrimination between neuromyelitis optica spectrum disorder patients and healthy controls using pupillary response characteristics measured by pupillometry, EUROPEAN JOURNAL OF NEUROLOGY 26, 857-857, 2019
E Sadeghnezhad, M Sharifi, H Zare, B Khorsand, J Zahiri, Cross talk between energy cost and expression of Methyl Jasmonate-regulated genes: from DNA to protein, Journal of plant biochemistry and biotechnology 28, 230-243, 2019
B Khorsand, A Khammari, N Shirvanizadeh, J Zahiri, SS Arab, OligoCOOL: A mobile application for nucleotide sequence analysis, Biochemistry and Molecular Biology Education 47 (2), 201-206, 2019
S Janfaza, B Khorsand, M Nikkhah, J Zahiri, Digging deeper into volatile organic compounds associated with cancer, Biology Methods and Protocols 4 (1), bpz014, 2019
R Abolfazli, S Samadzadeh, B Khorsand, J Zahiri, SS Arab, S Najafinia, Evaluation of pupillary response characteristics measured by pupillometry in differentiating MS from NMOSD with the machine-learning approach: a potential pupillary pattern, MULTIPLE SCLEROSIS JOURNAL 24, 816-816, 2018
S Janfaza, M Banan Nojavani, B Khorsand, M Nikkhah, J Zahiri, Cancer Odor Database (COD): a critical databank for cancer diagnosis research, Database 2017, bax055, 2017