Current Ph.D Students (4) :
- Emmanuel Dollinger (BS, Boston University)
- Eric Bourgian-Chang (BS, UC Berkeley)
- Manuel Barcenas (BS, UC Riverside)
- Xinyi Wang (BS, UC San Diego)
Current Postdoctoral Fellows (11):
- Federico Bocci, PhD Physics, Rice University. 2020-
- Axel Almet, PhD Mathematics, Oxford University. 2020-
- Peijie Zhou, Ph.D Mathematics, Peking University. 2019-
- Ben Walker, PhD Applied Mathematics, North Carolina U, Chapel Hill. 2021-
- Raul Ramos, PhD Biology, University of California, Irvine. 2021-
- Changhan He, PhD Mathematics, Arizona State University. 2021-
- Wei Zhao, PhD Mathematics, Peking University. 2021-
- Yutong Sha, PhD Mathematics, UC Irvine. 2022-
- Songhao Luo, PhD in Statistics, Sun Yat-sen University. 10/2023-
- Xiangxu Kuan, PhD in Integrative Life Science, Peking University. 10/2023-
- Jiawen Hou, PhD in Applied Mathematics, Fudan University. 6/2023-
- Yuchi Qiu, PhD in Mathematics, UC Irvine. 8/2023-
Supervised Postdoctoral Fellows (30):
- Peijie Zhou, PhD Mathematics, Peking University. 2019-2023. Current position: Tenure-track assistant professor, Center for Machine Learning, Academy for Advanced Interdisciplinary Studies, Peking University
- Christian Guerrero-Juarez, PhD Biology, University of California, Irvine. 2018-2022. Current position, MD student at Medical School of the University Illinois Urbana-Champaign
- Zixuan Cang, PhD Mathematics, Michigan State University. 2018-2021. Current position. Tenure-track Assistant Professor, Dept of Mathematics, North Carolina State University
- Suoqin Jin, PhD Mathematics, Wuhan University, China. 2016-2021. Current position: Tenured Associate Professor, School of Mathematics and Statistics, Wuhan University
- Lihua Zhang, PhD Academy of Mathematics and Systems Science Chinese Academy of Sciences. 2018-2021. Current position: undetermined as of July, 2021
- Shuxiong Wang, PhD, Academy of Mathematics and Systems Science, Chinese Academy of Sciences. 2016-2021. Current position: Data Scientist, Pfizer In, San Diego
- Lina Meinecke, PhD. Scientific Computing, Uppsala University, Sweden 2016-2019. Current position, Data Scientist, Life Science and medical industry-Altran, Munich, Germany
- Adam MacLean, Ph.D. Systems Biology, Imperial College London, UK. 2016-2018. Current position: Tenure-track Assistant Professor, Computational Biology,Dept. of Biology, U. of Southern California.
- Qixuan Wang, Ph.D., Mathematics, University of Minnesota. 2012-2018. Current Position: Tenure-track Assistant Professor, Department of Mathematics, University of California, Riverside.
- Weitao Chen, Ph.D. Math. Ohio State University. 2013-2017. Current Position: Tenure-track Assistant Professor, Department of Mathematics, University of California, Riverside, Riverside, CA
- Huijing Du, Ph.D. Applied Math. University of Notre Dame. 2013 -2016. Current position: Tenure-track Assistant Professor, Department of Mathematics, University of Nebraska, Lincoln, Nebraska
- Tian Hong, Ph.D., Biology, Virginia Tech. 2013-2016. Current position: Tenure-track Assistant Professor, Department of Biochemistry &Cellular and Molecular Biology, U. of Tennessee, Knoxville, Tennessee
- Chunhe Li, Ph.D., Chemistry, Chinese Academy of Sciences. 2015-2016. Current position, Tenure-track Assistant Professor, Center for Mathematical Science, Fudan University, Shanghai, China
- William Holmes, Ph.D., Indiana University. 2012-2014. Current position: Tenure-track Assistant Professor, Department of Physics, Vanderbilt University, Nashville, TN.
- Likun Zheng, Ph.D., Mathematics, University of Minnesota. 2011-2015. Current position: Data Scientist, Samsung Austin Research Center, Austin,
- Jiajun Zhang, Ph.D. Sun Yat-sen University. 2012-2013. Current position: Associate Professor, School of Mathematics, Sun Yat-sen U.
- Lei Zhang, Ph.D., Penn. State University. 2009-2012. Assistant Professor, Dept. of Mathematics City University of Hong Kong (2012-2013).Current position: Associate Professor, Young 1000 Talent Scholar, Center for Mathematics, Beijing University, China
- Zhenzhen Zheng, Ph.D., Ph.D. Chinese Academy of Sciences. 2009-2012. Researcher, Dept. of Mathematics, City University of Hong Kong (2012-2013). Current position: managing editor, Science China Mathematics, Science China, Press
- Jiang Xie, Ph.D., Shanghai University. 2011-2012. Current position: tenured Associate Professor, School of Computer Engineering and Science, Shanghai University
- Anna Cai, Ph.D., University of Melbourne. 2007-2011. Current position: Tenure-track Assistant Professor, U. of New South Wales, Sydney, Australia
- Liming Wang, Ph.D., Rutgers University 2008-2011. Position after postdoctoral training: Tenure-track Assistant Professor at CaliforniaState University, Los Angeles, CA from 2011-2015
- Hsiao-Mei Lu, Ph.D., Bioengineering, University of Illinois at Chicago. 2010-2011.
Position after postdoc: VP, Bioinformatics and Computational Biology, Ambry Genetics, Aliso Viejo, CA - Scott Christley, Ph.D., Computer Science, Notre Dame University. 2008-2010.
First position: Research Scientist, Medical School, University of Chicago, Chicago, IL. Current position: Research Scientist, UT Southwestern Medical Center, Dallas - Xinfeng Liu, Ph.D., SUNY, Stony Brook. 2006-2009. Current position: Associate Professor, U. of South Carolina, Columbia, SC
- Ching-Shan Chou, Ph.D. Brown University. 2006-2009. Current position; Associate Professor, The Ohio State University, Columbus, OH
- Shanqin Chen, Ph.D., Brown University. 2005-2006. Current position: Associate Professor, Indiana University at South Bend, South Bend, IN
- Yongtao Zhang, Ph.D., Brown University. 2003-2006. Current position: Associate Professor, Notre Dame University
- Jinzhi Lei, Ph.D., Beijing Aeronautic & Aerospace University. 2004-2005. Current position: Associate Professor, Tsinghua University, Beijing, China
- David Iron, Ph.D., University of British Columbia. 2003-2004. Current position: Professor, Dalhousie University, Nova Scotia, Canada
- Lan Pham, Ph.D., The Ohio State University. 2001-2003. Current position: Tenured Professor, Irvine Valley College, Irvine, CA.
Supervised Ph.D. Students (23):
- Yingxin Cao, PhD in Mathematical, Computational and Systems Biology, 09/202, “Deep Representation Learning for Single-cell Sequencing Data analysis”, co-supervisor with X. Xie from Computer Science. Position after PhD: Machine Learning Scientist, ShapeTX, Seattle, WA
- Mathew Karikomi. PhD in Mathematical, Computational, and Systems Biology, 06/2023. “Data-Augmentation in Single-cell Transcriptomics”.Position after PhD: Postdoctoral fellow, University of Michigan
- Honglei Ren, PhD in Mathematical, Computational, and Systems Biology. 06/2023. “Modeling and Deep Learning of Cellular Transcriptome and Epigenetic Regulation”. Position after PhD: Data Scientist, ByteDance Inc, San Jose, CA.
- Kevin Johnston, Mathematics PhD, 09/2022, “Spatiotemporal longitudinal tracking and continuous transcriptional variation of neurons”, Position after PhD: postdoctoral fellow at Department of Anatomy & Neurobiology, UCI
- Yutong Sha, Mathematics PhD, 03/2022. “Inference of cell fate transition from single-cell transcriptome data”. Position after PhD: Postdoctoral fellow at Mathematics, UC Irvine.
- Floyd Maseda, Matheamtics PhD, 09/2021. “Integrating single-cell transcriptomics data with spatial imaging data”. Position after PhD: Software Research Scientist, Canon USA, Irvine
- Yangyang Wang, Mathematics PhD, 12/2020. “Multiscale modeling for cell fate specification during regeneration and development”. Position after PhD: Senior Algorithm Engineer (Recommender System), BIGO Technology, Guangzhou, China
- Daniel Bergman, Mathematics PhD, 09/2020. “Mathematical modeling of cancer-immune interactions: agent-based and continuous modeling reveal novel, non-monotonic patterns”. Position after PhD: Termed Assistant Professor, Department of Mathematics, University of Michigan
- Yuchi Qiu, Mathematics PhD. 09/2020. “Multiscale modeling for tissue patterning: growth and stochasticity” . Position after PhD: Postdoctoral fellow and lecture, Department of Mathematics, Michigan State University
- Chris Rackauckas, Mathematics PhD. 06/2018 “Simulation and Control of Biological Stochasticity” . Current position: Instructor of Applied Math, Massachusetts Institute of Technology
- Tao Peng, Mathematics Ph.D.; 06/17; “Data-Driven Models for Dynamics of Gene Expression and Single Cells”
Current position: Postdoc, Medical School, University of Pennsylvania - Seth Figueroa, Ph.D. in Biomedical Engineering, 06/17; “Multiscale Modeling for Morphogenesis of healthy and Diseased Tissue”. Position after graduation: Postdoc, UC Irvine (07/2017 – 11/2018). Current position: Data Scientist, Focus Automated Equities, New Orleans
- Catherine Ta, Mathematics Ph.D.; 06/17; “Multiscale Modeling of the Epithelial-Mesenchymal Transition”
Current position: Advisor, KPMG, San Francisco - Dongyong Wang, Mathematics Ph.D.; 06/14; “Numerical Methods for Reaction Diffusion Systems in High Dimensions.”
Current Position: Data Scientist, Google Inc., Mountain View, CA - Jeremy Ovadia, Mathematics Ph.D.; 06/13; “Computational Modeling of Tissue Growth, Organization, and Patterning.”
Current Position: Investment Research Associate, Wilshire Associate, CA - Meng, Chen, Mathematics Ph.D.; 06/13; “Noise and Stochastic Dynamics in Biological Signaling and Patterning Systems.”
Current Position: Data Scientist, Intuit, San Jose, CA - Wing-Cheong Lo, Mathematics Ph.D; 06/11; “Growth and Pattern Controls by Morphogen Gradients”
Current Position: Tenure-track Assistant Professor, City University of Hong Kong, Hong Kong, China - Yu-Yu (Luke) Peng, Mathematics Ph.D.; 12/11; “Multiscale Modeling of Cell Populations and Intracellular Gene Regulatory.”
Current Position: CEO of cometourwithme.com - Su Zhao; Mathematics Ph.D, 06/11; “Computational Study of Signaling Specificity and Epigenetic Regulation”
Current Position: Software Engineer, Siemens PLM Software, Cypress, CA - Seth Haney, Mathematics Ph.D; 06/10; “Specificity, Ultrasensitivity and Polarization in Yeast Cell Mating”
Current Position: Lecturer, University of San Diego, San Diego, CA - Carlo Chan, Mathematics Ph.D; 06/10 ;“Scaffold can induce bistability in multisite phosphorylation”
Current Position: Assistant Professor, Irvine Valley College, Irvine, CA - Rui Zhao, Mathematics Ph.D; 06/06; “Computational Analysis of Morphogen Gradients”
Current Position: Risk Analyst, LinkedIn, Sunnyvale, California. - Myung Yun, Mathematics Ph.D; 09/03; “Numerical Simulations of Microstructure Evolution in Three-Dimensional Inhomogeneous Elastic Media”.;Current Position: Faculty, Dept. of Mathematics, East L.A. College, California.
Former M.S. Students:
- Xiaolan Yuan, M.S.; 06/17; “Noise Attenuation in Gene Regulatory Network.”
- Alex Gord, M.S.; 12/14; “Computational Modeling of Epidermal Stratification Highlights the Importance of Asymmetric Cell Division for Predictable and Robust Layer Formation”
- Ryan Moore, M.S.; 06/04; “Spatial Effects of Scaffolds in Intra-Cellular Signaling”; Current Position: Asst. V.P.; Union Bank of California, Los Angeles
- Yingying Li, M.S.; 12/10; “Stability Analysis of a Cell Lineage Model for Colonic Crypt”
- Angie Teng; M.S.; 06/04; “Effects of Sog on BMP Signaling”; Current Position: Aerospace Corporation, California