Collaborations
- VRDC https://vaccine.uci.edu/research/
- IFI https://immunology.uci.edu/
- The Acharya Lab https://www.faculty.uci.edu/profile.cfm?faculty_id=7045
- The Marangoni Lab https://www.immunoimaging.org/
- The Wagar Lab https://wagarlab.webflow.io/
- The Loaden Lab https://lodoenlab.bio.uci.edu/
- The Pathak Lab http://www.pathaklab.org/
Core facilities at UC Irvine
- Optical Biology Core https://obc.bio.uci.edu/
- SCRC Imaging Core https://stemcell.uci.edu/Resources/Research/microscope_imaging_core.php
- SCRC Flow Cortehttps://stemcell.uci.edu/Resources/Research/cytometry.php
- IFI Flow Core https://sites.uci.edu/ififlowcore/
- Genomics Research and Technology Hub (GRT Hub) https://genomics.uci.edu/
- Transgenic Mouse Facility https://www.research.uci.edu/facilities-services/tmf/index.html
Calcium Imaging Using Salsa6f
- LSL-Salsa6f Transgenic Reporter Mice (JAX 031968) https://www.jax.org/strain/031968
- Salsa6f Plasmid (Addgne #140188) https://www.addgene.org/140188/
- T-cell preparation for live-cell imaging using Salsa6f In Vitro https://bio-protocol.org/prep917
Fluorescence spectra viewers
- https://www.fpbase.org/
- https://www.bdbiosciences.com/en-us/resources/bd-spectrum-viewe
- https://searchlight.idex-hs.com/
- https://www.thermofisher.com/order/fluorescence-spectraviewer/?gclid=Cj0KCQjwlIG2BhC4ARIsADBgpVSciASIOFd-AD_z-K8N23V0wHJwTMq4jnqu84NseD7YPfnYI2WU70QaAu2nEALw_wcB&ef_id=Cj0KCQjwlIG2BhC4ARIsADBgpVSciASIOFd-AD_z-K8N23V0wHJwTMq4jnqu84NseD7YPfnYI2WU70QaAu2nEALw_wcB:G:s&s_kwcid=AL!3652!3!607635415877!e!!g!!thermo%20spectraviewer!2081760689!127753028375&cid=bid_pca_aup_r01_co_cp1359_pjt0000_bid00000_0se_gaw_bt_pur_con&gad_source=1#!/
Gene Expression Databases
- BIOGPS: http://biogps.org/#goto=welcome
- Immunological Genome Project: https://www.immgen.org/Databrowser19/DatabrowserPage.html http://rstats.immgen.org/Skyline/skyline.html
- Brain Atlas https://portal.brain-map.org/#
- Brain RNA-Seq https://www.brainrnaseq.org/
Microscopy Tutorials
- iBiology Microscopy Series https://www.ibiology.org/online-biology-courses/microscopy-series/
- Confocal Microscopy: Kurt Thorn https://www.youtube.com/watch?v=YRQsjPAx9UU
- Two-Photon Microscopy: Kurt Thorn https://www.youtube.com/watch?v=CZifB2aQDDM
- Leica LAS X Basic Training Playlist https://www.youtube.com/watch?v=v0imrJ5binU&list=PL_Uc-py4H0tEtnbRyi0uitwQQ1GW-5jl0
- Leica LAS X THUNDER Playlist https://www.youtube.com/playlist?list=PL_Uc-py4H0tFNBmGPJkxjKhOJFyZLHweX
- Introduction to LAS X for STELLARIS https://www.youtube.com/watch?v=VGtTtBkoih4
- LAS X Navigator User Interface https://www.youtube.com/watch?v=votAyCrhoQQ&list=PLbOT5XzuXAnOaikyQkuLolL9kfU0tKKB9
Image Analysis Tutorials
- Microscopy: Introduction to Digital Images (Kurt Thorn) https://www.youtube.com/watch?v=SNl3kRBgW10
- Microscopy: Image Analysis (Kurt Thorn) https://www.youtube.com/watch?v=jaY6S1p4i3A
- Bioimage Analysis – Christian Tischer (EMBL) https://www.youtube.com/watch?v=0PP38Z0CNMI
- Introduction to Image Analysis using Imaris https://www.youtube.com/watch?v=VqFh2Up5K7M
- Introduction to Time Lapse in Imaris https://imaris.oxinst.com/learning/view/article/introduction-to-time-lapse-in-imaris
- Become a Master of Tracking in Imaris https://imaris.oxinst.com/learning/view/article/mastering-tracking-in-imaris-3d-4d-visualization
- https://imaris.oxinst.com/homeschool
- https://www.youtube.com/watch?v=kC8bNWKyHvc
- https://imaris.oxinst.com/learning/view/article/introduction-to-image-analysis-using-imaris
- https://imaris.oxinst.com/learning/view/article/first-steps-in-imaris-image-analysis-software
Links to Learn Flow Cytometry
- iBiology Flow Cytometry Introduction – Malte Paulsen (EMBL) https://www.youtube.com/watch?v=W1BFeiDwqnk
- Panel Design in BD Research Cloud Aug 9, 2023 with Veronica Obregon Perko https://www.youtube.com/watch?v=Owo-PA67ueY
- ACEA NovoCyte Flow Cytometer – Introduction https://www.youtube.com/watch?v=4vhxDncZMeo
- Evaluation of ACEA’s NovoCyte Flow Cytometer https://www.youtube.com/watch?v=0Z5naDqiZak
- Compensation in Flow Cytometry Webinar- ACEA https://www.youtube.com/watch?v=vX264oMKMxc
To Improve Scientific Writing
- Writing Science: How to Write Papers That Get Cited and Proposals That Get Funded 1st Edition
- https://www.amazon.com/Writing-Science-Papers-Proposals-Funded/dp/0199760241
- Writing Science in Plain English (Chicago Guides to Writing, Editing, and Publishing) Chicago Guides to Writing, Editing and Publishing Editionhttps://www.amazon.com/Writing-Science-English-Chicago-Publishing/dp/022602637X/ref=pd_bxgy_thbs_d_sccl_2/144-0758539-9763353?pd_rd_w=OZVKp&content-id=amzn1.sym.7a852ee0-0a6d-4799-a94f-16897e369d05&pf_rd_p=7a852ee0-0a6d-4799-a94f-16897e369d05&pf_rd_r=GDJYZ4VHHAJ9GNAEF880&pd_rd_wg=JKP2q&pd_rd_r=b621798c-9961-4cbd-a401-600a2abe2856&pd_rd_i=022602637X&psc=1
Our Favorite Immunology Books
- How the Immune System Works 6th Edition https://www.amazon.com/How-Immune-System-Works/dp/111954212X
- iBiology Flow Cytometry Introduction – Malte Paulsen (EMBL) https://www.youtube.com/watch?v=W1BFeiDwqnk
- Panel Design in BD Research Cloud Aug 9, 2023 with Veronica Obregon Perko https://www.youtube.com/watch?v=Owo-PA67ueY
For Beginners in Biomedical Research
- At the Bench: A Laboratory Navigator, Updated Edition https://www.amazon.com/At-Bench-Laboratory-Navigator-Updated/dp/0879697083
- Experimental Design for Biologists, Second Edition 2nd Edition https://www.amazon.com/Experimental-Design-Biologists-Second-David/dp/1621820416
- Statistics at the Bench: A Step-by-Step Handbook for Biologists 1st Edition https://www.amazon.com/Statistics-Bench-Step-Step-Biologists/dp/0879698578
Multiphoton Excitation Spectra of Fluorochromes
- Excitation spectra and brightness optimization of two-photon excited probes https://pubmed.ncbi.nlm.nih.gov/22385865/
- Two-photon absorption properties of fluorescent proteins https://pubmed.ncbi.nlm.nih.gov/21527931/