Qing Nie
- UC Presidential Chair
- Distinguished Professor of Mathematics and Developmental & Cell Biology, affiliated with the Department of Biomedical Engineering, at the University of California, Irvine.
- Director of The NSF-Simons Center for Multiscale Cell Fate Research. He works on computational systems biology, cell fates, multiscale biology, and tools for analyzing single-cell RNA-seq data, scientific computing, and computational mathematics.
- Highly Ranked Scholar (ScholarGPS): #4 Transcriptomics Technologies – Prior Five Years
- Curriculum Vitae
Postdoc position is available for the 2023-2024 cycle — link to application site
NEWS
- November 2024. Congratulations to Raul for his long-time project: Super-stable lipid vacuoles endow cartilage with its shape and biomechanics, officially accepted by Science
- September 2024. Our CellChat Nature Protocols paper was published: CellChat for systematic analysis of cell-cell communication from single-cell transcriptomics
- August 2024, Congratulations to Axel’s Nature Methods paper: Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics
- May 2024, Nature Methods Briefing: A transition tensor for quantifying spatial transcriptome attractors.
- May 2024 – Congratulations to Peijie and Federico for their paper: Spatial transition tensor of single cells on Nature Methods, 2024.
- February 2024 – Congratulations to Raul Ramos and Axel Almet who worked with our collaborators M Plikus (UCI) and Ricardo Mallarino (Princeton) for the paper: Emx2 underlies the development and evolution of marsupial gliding membranes, Nature, 2024.
- December 2023 – Congratulations to Yutong Sha, Yuchi Qiu, and Peijie Zhou for their paper: Reconstruct growth and dynamic trajectories from single-cell transcriptomics data in Nature Machine Intelligence, 2023
- October 2023 – Congratulations to Ben Walker for his paper: NeST: Nested hierarchical structure identification in spatial tanscriptomics data, Nature Communications, 2023.
- June 2023 – Congratulations to Max Plikus (our close collaborator) and Xiaojie Wang for our collaboration that involve many team members: Signaling by senescent melanocytes hyperactivate hair growth in Nature, 2023.
- March 2023 – Congratulations to Kai Kessenbrock, his team, Peijie Zhou, and our successful collaboration: Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis in Nature Genetics, 2023
- February 2023 – Congratulations to Wei Zhao for his paper: Inferring neuron-neuron communications from single-cell transcirptomics through NeuronChat in Nature Communications, 2023
- January 2023 – Congratulations to Zixuan Cang, Axel Almet, and Raul Ramos for their paper: Screening cell-cell communication in spatial transcriptomics vis collective optimal transport in Nature Methods, 2023